GST Payment Filing: A Simple Step-by-Step Guide Anyone Can Follow

GST Payment Filing: A Simple Step-by-Step Guide Anyone Can Follow Apr, 18 2025

If you're running a business in India, making your GST payment on time saves you a ton of headaches (and penalties). The good news? You don't need to be a tax pro to get this done. All you need are a few details, your login info for the GST portal, and maybe a good cup of chai to keep things simple.

Before you even log in, keep your GSTIN number, previous returns (if any), and your bank details close. Double-check them—one typo can lead to a payment stuck in the banking black hole. The GST portal itself is straightforward, but it helps to be organized so you don't spend your whole afternoon hunting for lost info.

Getting Your Documents and Details Ready

Don't even think of logging into the GST portal without your paperwork sorted. Missing one thing means you’re back to square one. If you want your GST payment to go smoothly, make a quick checklist first. Here’s exactly what you should have ready so you can finish the payment in one go.

  • GSTIN (Goods and Services Tax Identification Number): This is your 15-digit code, kind of like a tax ID for your business. You’ll need to enter this every time you file or make payments.
  • Login credentials for the GST portal: That means your username and password. If you forget them, use the password reset—don’t waste time guessing.
  • Previous GST return filings (if any): This helps if you want to double-check numbers or look at past payments. It’s not needed for the actual payment but having them handy can prevent mistakes.
  • Bank account details and net banking info: Your account must be active and set up for digital payments. The GST portal also supports UPI and some credit/debit cards, but most folks stick with net banking for higher limits.
  • Income/turnover details for the period you’re paying for: If you make an error here, the numbers won’t add up and your filing may get flagged later.
  • Challan Form (Form GST PMT-06): If you’re paying tax, interest, penalty, or late fees, you’ll fill in this online on the portal.

Here’s a quick look at how mistakes or missing info can cost you:

Document/Detail Why It Matters Common Problems
GSTIN Identifies you on the GST portal Typos lead to payment not showing up
Bank Details Needed for GST payment Wrong account = payment failure/refund delay
Income Figures Used for tax calculation Errors can mean overpaying or underpayment penalties

One last tip: double-check the filing deadline for your type of GST (like GSTR-3B or GSTR-1). If you pay late, you get a penalty per day. It’s easy to avoid—just prep these details ahead and set a reminder in your phone so you never miss your window.

Step-by-Step GST Payment on the Portal

Paying your GST payment through the GST portal is pretty straightforward once you break it down. The government made the process online for everyone’s convenience, but the portal’s many tabs can throw you off the first time. Here’s how you get it done without any hassle:

  1. Log in to the official GST portal at www.gst.gov.in using your GSTIN, username, and password. If you forgot your info, there’s always a "Forgot password" link right below the login.
  2. Once you’re in, go to the “Services” tab, choose “Payments”, and then click on "Create Challan". A challan is basically your bill for that GST period.
  3. Pick the tax period (month and year), and make sure you select the right kind of GST: CGST, SGST, or IGST, depending on what you owe. If you skip this, your return won’t match up later.
  4. Type in the exact amount you owe under each head (like tax, interest, late fees if you’re a bit behind). The portal won’t tell you what to pay, so have your calculations ready to enter here.
  5. Choose your payment method—Net Banking, Credit/Debit Card, or NEFT/RTGS. Net banking is usually the fastest for most people.
  6. Hit "Generate Challan" and double-check all your details. If everything looks right, click “Make Payment”. You’ll get redirected to your bank’s payment page if you picked a digital method.
  7. Finish the payment process through your bank. Once you pay, you’ll get a payment receipt and a Challan Identification Number (CIN). Save this—it’s your only proof in case anything goes wrong or you get asked for it by GST authorities.

Banks get lots of GST transactions every tax deadline, so don’t wait till the last minute—payments after 8 p.m. on the deadline typically reflect the next working day.

StepWhat You DoTip
LoginEnter GSTIN and passwordDouble-check login details to avoid lockout
Create ChallanSelect period, enter amountsMatch your books and previous return
PaymentPick method, pay, save receiptUse net banking for instant confirmation

The GST filing is incomplete without successful payment and a valid CIN, so don’t close your browser until you see the confirmation. If anything feels odd—portal loads slow, or your receipt isn’t generated—don’t refresh randomly. Log out, wait, and try again after a few minutes. Sometimes the system just gets busy around tax days.

Payment Methods and Tips to Avoid Mistakes

Payment Methods and Tips to Avoid Mistakes

When it’s time to make your GST payment, you’ve got a bunch of options that make it pretty flexible. The GST portal lets you pay through internet banking, credit or debit card, NEFT/RTGS, or by generating a challan for over-the-counter bank payments. Most businesses stick with internet banking since it’s fast—with over 60% of GST payments in 2024 happening online, according to the GST Council.

Here’s how it usually works:

  1. Select your payment mode while creating your payment challan (Form GST PMT-06) on the GST portal.
  2. If you pick internet banking, you’ll see a list of supported banks. It’s best to have your bank’s net banking working before you start—otherwise you’ll waste time registering or troubleshooting.
  3. For NEFT/RTGS, the system gives you a pre-filled challan; just carry it to your bank branch. Remember, payments by NEFT can sometimes take a day or two to reflect. Don’t leave it for the last day if you’re using this method.
  4. Over-the-counter payments (at the bank) come with a catch—you can only use cash, cheque, or demand draft, and it’s capped at Rs 10,000 per challan per tax period.

Now, you don’t want to get slapped with a late fee or get stuck fixing silly errors. Here are real tips that save you stress:

  • Double-check the GSTIN before payment. If you pay to the wrong GSTIN, it’s a nightmare to reverse it.
  • Always save the payment reference number and challan copy. The portal gives you an instant receipt—download it or email it to yourself for proof.
  • ✅ A stuck transaction? Don’t freak out. Usually, failed payments get auto-reversed to your bank within a couple of days. But if it’s not showing up, contact GST helpdesk (1800-1200-232) with your reference details.
  • Pay ahead of the deadline if possible. In March 2024, the GST portal saw huge traffic spikes close to due dates, leading to delays and server slowdowns.
Quick Facts: GST Payment Modes in 2024
ModeTime to ReflectMax Limit
Internet BankingImmediateNo limit
Credit/Debit CardImmediateBank's limit
NEFT/RTGS1-2 daysNo limit
Over the CounterImmediateRs 10,000

One last thing—never trust payment links from emails or SMS that aren’t from the official GST portal (https://www.gst.gov.in). Frauds are rising, with several reported cases of fake payment pages in 2023. Always use the GST portal directly for the safest and smoothest filing.

What to Do After You Pay

Once you’ve made your GST payment through the online portal, there are a few things you absolutely need to do. Don’t rush to close your browser or log out just yet—this last part matters for your peace of mind (and your accountant, if you have one).

  1. Download and save the payment receipt (Challan): The portal generates a Challan (unique receipt) after every successful GST payment. Download this PDF and store it safely, both on your computer and in a cloud folder if you can. It’s your proof that the payment went through. Small businesses have lost hours trying to retrieve old Challans—don’t be that person.
  2. Check your Cash Ledger: Your payment will show up in your Electronic Cash Ledger. Head to ‘Services’ > ‘Ledgers’ > ‘Electronic Cash Ledger’ on the portal. If the amount isn’t reflected within 10-15 minutes (sometimes a bit longer for NEFT/RTGS), note down the transaction reference number and contact GST support—a lost payment is rare but not unheard of.
  3. Get confirmation email/SMS: The GST portal usually sends a confirmation email and SMS to your registered contact details after payment. If you don’t get this, check your spam folder or profile info. This is extra backup for your own records.
  4. Update your accounts/books: Right after paying, update your accounting software or old-school ledger. Enter the payment date, GSTIN, and transaction number. Missing this step is a common reason for reconciliation headaches during audits.
  5. Check for errors and pending dues: While you’re logged in, look for any outstanding returns, interest, or penalty displayed on your dashboard. Catching it early helps avoid the snowball effect of missed payments and late fees.

According to GST portal stats from early 2024, about 9% of payment errors happen due to wrong bank details or timing out during payment. Double-checking your info before and after payment could save you a big hassle.

What to CheckWhy It Matters
Challan DownloadServes as evidence of payment during audits
Cash Ledger UpdateConfirms your GST payment was received by GSTN
Dashboard DuesAvoids accidental late fees or notices

One last tip: if you paid close to the due date, revisit your dashboard a couple of days later to ensure everything’s settled. Payment glitches rarely occur, but catching them early saves money and stress.